Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_1585slyX family protein. (67 aa)    
Predicted Functional Partners:
LO55_1000
Histidine triad (HIT) protein.
 
    0.688
LO55_1584
Matrixin family protein.
       0.618
LO55_1582
Hypothetical protein.
 
     0.569
LO55_697
Sporulation related domain protein.
  
     0.538
LO55_1215
Sel1 repeat family protein.
  
     0.523
rep
Hypothetical protein; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction.
 
     0.464
LO55_1586
Peptidase M3 family protein.
       0.450
LO55_928
Hypothetical protein.
  
     0.445
LO55_926
SMC s Flexible Hinge domain protein.
  
     0.436
LO55_927
Hypothetical protein.
  
     0.432
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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