STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1619gntP: transporter, gluconate:H+ symporter family protein. (438 aa)    
Predicted Functional Partners:
LO55_1621
Therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family protein.
 
  
 0.827
LO55_1617
Trehalose utilization family protein.
 
     0.790
LO55_1618
SMP-30/Gluconolaconase/LRE-like region family protein.
     
 0.769
LO55_1620
tonB dependent receptor family protein.
       0.757
LO55_2630
Therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family protein.
 
  
 0.682
LO55_3336
Glycerate kinase family protein; Belongs to the glycerate kinase type-1 family.
  
  
 0.579
LO55_3074
Carbohydrate kinase, FGGY family.
 
  
 0.573
LO55_3666
Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein.
  
  
 0.517
LO55_3900
Amino acid permease family protein.
  
   
 0.427
eda
Eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein.
 
   
 0.423
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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