STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1640Organ_hyd_perox: peroxiredoxin, Ohr subfamily protein. (141 aa)    
Predicted Functional Partners:
ohrR
Transcriptional regulator OhrR.
  
 0.756
LO55_2223
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.744
LO55_2641
Ferritin-like domain protein; Belongs to the Dps family.
  
  
 0.700
LO55_3781
Hypothetical protein.
   
    0.515
LO55_63
csbD-like family protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.492
LO55_65
csbD-like family protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.492
LO55_2421
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
    0.473
LO55_1641
Alpha/beta hydrolase fold family protein.
       0.470
LO55_1639
Bacterial regulatory s, lacI family protein.
       0.434
LO55_1798
Hypothetical protein; N-terminal domain of DJ-1_PfpI family protein.
  
    0.424
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.