STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1688Alpha/beta hydrolase family protein. (209 aa)    
Predicted Functional Partners:
LO55_1689
Thioredoxin-like [2Fe-2S] ferredoxin family protein.
 
     0.799
LO55_1687
D-alanyl-D-alanine carboxypeptidase family protein; Belongs to the peptidase S11 family.
 
     0.678
LO55_1690
vanZ like family protein.
 
     0.666
LO55_1691
Hypothetical protein.
 
     0.656
LO55_1692
Mce related family protein.
       0.601
LO55_1693
ABC transporter family protein.
       0.601
trpS
trpS: tryptophan--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.596
gshA-2
gshA_ferroox: glutamate--cysteine ligase.
  
     0.574
LO55_92
Hypothetical protein.
 
     0.503
LO55_1694
Permease family protein.
       0.487
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.