STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gly43Nbeta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N. (316 aa)    
Predicted Functional Partners:
LO55_3678
Glycosyl hydrolases 43 family protein.
 
     0.855
yesW
Rhamnogalacturonan lyase yesW.
  
 
 0.809
LO55_184
alpha-L-arabinofuranosidase family protein.
 
  
 0.801
LO55_4175
Glycosyl hydrolases 2 family protein; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.801
LO55_182
Hypothetical protein.
   
 0.793
LO55_3660
Hypothetical protein.
  
  
  0.793
LO55_3150
Hypothetical protein.
  
  
  0.786
LO55_174
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.770
LO55_3645
Glycosyl hydrolases 43 family protein; Belongs to the glycosyl hydrolase 43 family.
  
     0.765
LO55_3676
GDSL-like Lipase/Acylhydrolase family protein.
  
  
  0.759
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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