STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1768Glycine zipper family protein. (440 aa)    
Predicted Functional Partners:
LO55_2369
Glycine zipper 2TM domain protein.
   
  
 0.655
LO55_2223
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
    0.652
LO55_1767
Transglycosylase associated family protein.
  
    0.589
LO55_2940
Putative rsbT antagonist protein rsbS.
  
    0.524
LO55_2939
STAS domain protein.
  
    0.518
LO55_3283
STAS domain protein.
  
    0.514
LO55_2808
Stress-induced bacterial acidophilic repeat motif family protein.
  
    0.491
LO55_2942
Stage II sporulation E family protein.
  
    0.483
LO55_2762
Stress-induced bacterial acidophilic repeat motif family protein.
  
    0.478
LO55_4727
Hypothetical protein.
  
     0.451
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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