STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
feoBfeoB: ferrous iron transport protein B. (619 aa)    
Predicted Functional Partners:
LO55_1783
feoA domain protein.
 
  
 0.991
LO55_1785
Hypothetical protein.
       0.799
LO55_1782
BFD-like [2Fe-2S] binding domain protein.
     
 0.570
LO55_759
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
   
 
 0.445
hprK
HPr(Ser) kinase/phosphatase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr).
  
    0.441
LO55_3904
Thioredoxin family protein.
  
    0.423
LO55_4045
Prolipodiacylglyceryl transferase family protein.
  
    0.423
LO55_4049
Prolipodiacylglyceryl transferase family protein.
  
    0.423
LO55_3526
CDF: cation diffusion facilitator transporter family protein.
   
 
 0.420
LO55_1409
Aminotransferase class IV family protein.
     
 0.417
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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