STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_182Hypothetical protein. (781 aa)    
Predicted Functional Partners:
LO55_184
alpha-L-arabinofuranosidase family protein.
 
   
 0.958
arbA
Endo-a1,5-arabinanase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.947
LO55_185
Hypothetical protein; Glycosyl-hydrolase 97 N-terminal family protein.
 
     0.922
LO55_191
Glycosyl hydrolases 43 family protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.816
LO55_3648
Glycosyl hydrolases 28 family protein; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.804
gly43N
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N.
   
 0.792
LO55_3644
Glycosyl hydrolases 43 family protein.
   
 0.785
gly43N-2
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.776
LO55_3664
Glycosyl hydrolases 43 family protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.774
LO55_3660
Hypothetical protein.
  
     0.762
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.