Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LO55_1850Hypothetical protein. (302 aa)    
Predicted Functional Partners:
LO55_1001
4Fe-4S dicluster domain protein.
    
 0.730
pheA
CM_P2: chorismate mutase.
    
 0.719
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
  0.693
LO55_4803
Hypothetical protein.
 
     0.655
LO55_77
Hypothetical protein.
 
     0.640
LO55_432
tonB-dependent Receptor Plug domain protein.
  
     0.610
LO55_3015
AAA domain protein.
  
    0.594
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
  
    0.584
LO55_4118
pepSY-associated TM helix family protein.
  
     0.575
LO55_4281
Hypothetical protein.
 
     0.575
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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