STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
LO55_1876Na_symport_lg: putative sodium:solute symporter, VC_2705 subfamily protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (686 aa)    
Predicted Functional Partners:
LO55_1877
Na_symport_sm: putative solute:sodium symporter small subunit domain protein.
 
    0.949
LO55_5086
Hypothetical protein.
 
  
 0.946
LO55_1878
HAMP domain protein.
 
     0.836
LO55_1879
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
     0.809
acs
acetate--CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.761
LO55_3427
AMP-binding enzyme family protein.
  
  
 0.761
LO55_1875
X-Pro dipeptidyl-peptidase family protein.
       0.515
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
       0.499
aceB
malate_syn_A: malate synthase A; Belongs to the malate synthase family.
  
  
 0.465
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
   
  
 0.463
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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