Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_189SMP-30/Gluconolaconase/LRE-like region family protein. (293 aa)    
Predicted Functional Partners:
LO55_188
Dehydratase family protein; Belongs to the IlvD/Edd family.
 
  
  0.882
LO55_190
Aldose 1-epimerase family protein; Converts alpha-aldose to the beta-anomer.
     
 0.794
LO55_3481
NHL repeat family protein.
  
  
  0.784
LO55_191
Glycosyl hydrolases 43 family protein; Belongs to the glycosyl hydrolase 43 family.
       0.705
gph
Phosphoglycolate phosphatase; Sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein; gph: sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein.
 
     0.697
LO55_193
tonB-Xanth-Caul: TonB-dependent receptor family protein.
       0.638
LO55_186
Short chain dehydrogenase family protein.
 
  
  0.614
LO55_3164
Dehydratase family protein; Belongs to the IlvD/Edd family.
 
  
  0.612
LO55_3161
Fumarylacetoacetate (FAA) hydrolase family protein.
 
  
  0.609
gfo
Glucose--fructose oxidoreductase.
 
 
 0.518
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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