STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_190Aldose 1-epimerase family protein; Converts alpha-aldose to the beta-anomer. (351 aa)    
Predicted Functional Partners:
galK-2
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 0.982
galK
Gal_kin: galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 0.978
galE
galE: UDP-glucose 4-epimerase GalE; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 0.943
galT-2
galT_1: galactose-1-phosphate uridylyltransferase.
 
 0.835
galT
galT_1: galactose-1-phosphate uridylyltransferase.
 
 0.821
LO55_189
SMP-30/Gluconolaconase/LRE-like region family protein.
     
 0.801
LO55_191
Glycosyl hydrolases 43 family protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.769
LO55_1610
marR family protein.
 
  
 0.723
glk-3
Glk: glucokinase; Belongs to the bacterial glucokinase family.
    
 0.709
glk-4
Glk: glucokinase; Belongs to the bacterial glucokinase family.
    
 0.709
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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