STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_191Glycosyl hydrolases 43 family protein; Belongs to the glycosyl hydrolase 43 family. (316 aa)    
Predicted Functional Partners:
LO55_184
alpha-L-arabinofuranosidase family protein.
 
   
 0.839
gph
Phosphoglycolate phosphatase; Sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein; gph: sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein.
 
  
 0.824
LO55_182
Hypothetical protein.
 
     0.817
arbA
Endo-a1,5-arabinanase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.800
LO55_190
Aldose 1-epimerase family protein; Converts alpha-aldose to the beta-anomer.
 
     0.769
LO55_189
SMP-30/Gluconolaconase/LRE-like region family protein.
       0.705
LO55_193
tonB-Xanth-Caul: TonB-dependent receptor family protein.
       0.698
gly43N
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N.
 
   
 0.691
LO55_3712
Glycosyl hydrolases 43 family protein.
 
   
 0.686
LO55_3644
Glycosyl hydrolases 43 family protein.
   
 0.684
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.