STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1922CDF: cation diffusion facilitator transporter family protein. (328 aa)    
Predicted Functional Partners:
LO55_1923
Bacterial regulatory, arsR family protein.
     
 0.801
LO55_1924
Insulinase family protein.
       0.598
LO55_1925
Calcineurin-like phosphoesterase family protein.
  
    0.588
LO55_1926
pncC_: amidohydrolase, PncC family domain protein; Belongs to the CinA family.
       0.579
LO55_607
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
    0.486
LO55_1134
CDF: cation diffusion facilitator transporter family protein.
 
 
 
 0.462
LO55_4095
ATPase-IB1_Cu: copper-translocating P-type ATPase.
  
  
 0.450
LO55_3526
CDF: cation diffusion facilitator transporter family protein.
 
   
0.438
LO55_4143
Heavy-metal-associated domain protein.
 
     0.414
LO55_2931
Hypothetical protein.
   
    0.406
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.