Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trxAThioredoxin: thioredoxin; Belongs to the thioredoxin family. (108 aa)    
Predicted Functional Partners:
trxB
TRX_reduct: thioredoxin-disulfide reductase.
 0.987
LO55_2754
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
 0.918
LO55_2060
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 0.886
LO55_3525
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
 0.866
groL
Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
 
 0.863
LO55_3654
Rhs_assc_core: RHS repeat-associated core domain protein.
    
   0.859
LO55_248
Flavin-binding monooxygenase-like family protein.
  
 0.845
LO55_346
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
 0.845
LO55_2172
Oxidoreductase.
  
 0.832
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase.
  
 
 0.818
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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