STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutCHis_ut_repres: histidine utilization repressor. (233 aa)    
Predicted Functional Partners:
LO55_1970
hutD family protein.
 
  
 0.945
hutI
hutI: imidazolonepropionase.
 
 
 0.898
LO55_2894
AAA domain protein.
   
    0.880
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.856
hutH
hutH: histidine ammonia-lyase.
 
  
 0.822
hutG
hutG_amidohyd: N-formylglutamate deformylase.
 
 
 0.782
hutF
hutF: formiminoglutamate deiminase.
 
  
 0.746
LO55_4300
Helix-turn-helix family protein.
  
  
 0.712
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.563
LO55_3819
Bacterial regulatory s, gntR family protein.
  
  
 0.558
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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