STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1965Amidohydrolase family protein. (556 aa)    
Predicted Functional Partners:
hutH
hutH: histidine ammonia-lyase.
 
     0.569
LO55_1963
Ogt: methylated-DNA--[]-cysteine S-methyltransferase family protein.
       0.555
LO55_1964
2OG-Fe(II) oxygenase superfamily protein.
       0.550
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
       0.535
LO55_1466
Putative xaa-Pro dipeptidase.
  
     0.521
LO55_1730
Amidohydrolase family protein.
  
     0.501
LO55_36
Peptidase M20/M25/M40 family protein.
  
     0.498
hutG
hutG_amidohyd: N-formylglutamate deformylase.
       0.485
hutF
hutF: formiminoglutamate deiminase.
       0.485
LO55_1970
hutD family protein.
       0.485
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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