Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
hutFhutF: formiminoglutamate deiminase. (458 aa)    
Predicted Functional Partners:
hutG
hutG_amidohyd: N-formylglutamate deformylase.
 
 
 0.996
hutI
hutI: imidazolonepropionase.
 
  
 0.996
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.944
hutH
hutH: histidine ammonia-lyase.
 
  
 0.942
LO55_1970
hutD family protein.
 
    0.918
LO55_3426
4Fe-4S binding domain protein.
  
 
  0.751
hutC
His_ut_repres: histidine utilization repressor.
 
  
 0.745
xdhB
xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit.
 
 
 0.735
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
    
 0.726
xdhA
xanthine_xdhA: xanthine dehydrogenase, small subunit.
 
  
  0.725
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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