STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1980outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein. (499 aa)    
Predicted Functional Partners:
LO55_1979
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein.
 0.965
LO55_1978
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.964
LO55_2537
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.865
LO55_3356
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.864
LO55_3006
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.855
mexB
Multidrug resistance protein MexB.
 0.850
LO55_2536
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein.
 0.841
LO55_4129
RND_mfp: efflux transporter, RND family, MFP subunit.
  
 0.826
LO55_3845
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 0.823
LO55_2349
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 0.820
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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