STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_1990NHL repeat family protein. (437 aa)    
Predicted Functional Partners:
LO55_247
Hypothetical protein.
 
    0.619
LO55_1995
Cytochrome c family protein.
    
 0.605
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
    
 0.605
LO55_1988
4Fe-4S single cluster domain protein.
       0.596
LO55_1989
Major Facilitator Superfamily protein.
       0.596
sldA
Glycerol dehydrogenase large subunit.
  
 
 0.526
bkdA1
2-oxoisovalerate dehydrogenase subunit alpha.
  
 
  0.475
LO55_83
NADPH-dependent FMN reductase family protein.
 
     0.462
LO55_4312
Iron-containing redox enzyme family protein.
  
  
  0.455
LO55_1669
snoaL-like domain protein.
  
     0.413
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.