Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_1998Putative carboxymuconolactone decarboxylase. (184 aa)    
Predicted Functional Partners:
LO55_2673
Carboxymuconolactone decarboxylase family protein.
    
 0.776
LO55_2205
Hypothetical protein.
  
     0.577
LO55_2201
Hypothetical protein.
  
     0.572
LO55_2465
Hypothetical protein.
  
     0.548
LO55_1999
Aminotransferase class-III family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.536
LO55_3517
Alpha/beta hydrolase family protein.
  
  
  0.529
LO55_2305
Alpha/beta hydrolase family protein.
  
  
  0.523
LO55_4631
Hypothetical protein.
  
     0.512
purB
purB: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
  0.507
LO55_4024
Hypothetical protein; acyl-CoA dehydrogenase, C-terminal domain protein.
 
     0.472
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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