Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_201Peptidase M28 family protein. (544 aa)    
Predicted Functional Partners:
LO55_4469
Peptidase M20/M25/M40 family protein.
  
     0.628
LO55_1886
Hypothetical protein; Dipeptidyl peptidase IV (DPP IV) N-terminal region family protein.
 
     0.612
LO55_305
tonB dependent receptor family protein.
  
     0.602
LO55_432
tonB-dependent Receptor Plug domain protein.
  
     0.590
LO55_317
tonB dependent receptor family protein.
  
     0.583
LO55_62
Dipeptidyl peptidase IV.
  
     0.581
LO55_318
tonB dependent receptor family protein.
  
     0.568
LO55_4869
Alpha/beta hydrolase fold family protein; Belongs to the type-B carboxylesterase/lipase family.
 
 0.551
LO55_3510
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
  
     0.533
LO55_3326
tonB dependent receptor family protein.
  
     0.528
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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