STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaJPA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit. (170 aa)    
Predicted Functional Partners:
LO55_2010
Phenylacetic acid catabolic family protein.
 
 
 0.998
LO55_2009
Phenylacetic acid degradation B family protein.
 
 
 0.997
LO55_2008
Phenylacetic acid catabolic family protein.
 
 
 0.995
LO55_2012
2Fe-2S iron-sulfur cluster binding domain protein.
 
 
 0.990
paaB
paaB1: phenylacetate degradation putative enoyl-CoA hydratase PaaB.
 
 
 0.979
paaD
paaD: phenylacetic acid degradation protein PaaD.
 
 
 0.978
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
 
  
 0.969
paaF
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
  
 0.939
iscU
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
    0.907
LO55_3439
enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.896
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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