Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
paaYpaaY: phenylacetic acid degradation protein PaaY. (196 aa)    
Predicted Functional Partners:
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
 
   
 0.839
LO55_1858
Carbonic anhydrase family protein.
    
 0.774
LO55_3982
Carbonic anhydrase family protein.
    
 0.774
paaD
paaD: phenylacetic acid degradation protein PaaD.
 
   
 0.770
pcaF
pcaF: 3-oxoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.748
paaF
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
     
 0.745
paaB
paaB1: phenylacetate degradation putative enoyl-CoA hydratase PaaB.
 
   
 0.728
paaC
paaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC.
 
   
 0.727
LO55_2010
Phenylacetic acid catabolic family protein.
 
   
 0.672
paaJ
PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit.
 
   
 0.666
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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