STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2040Sigma-54 interaction domain protein. (281 aa)    
Predicted Functional Partners:
LO55_2039
VWA domain containing CoxE-like family protein.
 
    0.941
LO55_4354
Hypothetical protein; orn/Lys/Arg decarboxylase, N-terminal domain protein.
    
 
 0.751
LO55_1136
Hypothetical protein.
    
 0.615
LO55_2041
Cytochrome c family protein.
 
     0.615
LO55_2042
Cytochrome c family protein.
       0.558
LO55_1612
cobN/Magnesium Chelatase family protein.
     
 0.542
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.512
LO55_98
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
     0.507
LO55_978
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
     0.503
LO55_4246
AMP-binding enzyme family protein.
 
    0.486
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.