STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2055ABC transporter family protein. (265 aa)    
Predicted Functional Partners:
LO55_2054
Binding--dependent transport system inner membrane component family protein.
 
 0.998
LO55_2053
Bacterial extracellular solute-binding s, 3 family protein.
 
 
 0.976
LO55_818
Binding--dependent transport system inner membrane component family protein.
 
 
 0.948
LO55_2920
Binding--dependent transport system inner membrane component family protein.
 
 
 0.937
LO55_498
Binding--dependent transport system inner membrane component family protein.
 
 0.925
ntrB-2
ntrB: nitrate ABC transporter, permease protein.
 
 0.917
ntrB
ntrB: nitrate ABC transporter, permease protein.
 
 0.914
LO55_4930
NMT1-like family protein.
 
 0.817
LO55_373
NMT1-like family protein.
 
 0.807
LO55_497
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
 
 0.799
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.