STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_20623-demethylubiquinone-9 3-methyltransferase family protein. (141 aa)    
Predicted Functional Partners:
LO55_2894
AAA domain protein.
   
    0.862
LO55_3087
Glutathione-dependent formaldehyde-activating enzyme family protein.
  
    0.774
LO55_1890
Hypothetical protein.
 
  
 0.686
LO55_2063
iclR helix-turn-helix domain protein.
 
   
 0.678
LO55_1157
Aminotransferase class-V family protein.
  
 
  0.644
LO55_3428
3-demethylubiquinone-9 3-methyltransferase family protein.
 
  
 0.641
LO55_4061
Rhodanese-like domain protein.
  
 
  0.632
LO55_3359
Glyoxalase-like domain protein.
  
 
 0.620
LO55_612
Polyketide cyclase / dehydrase and lipid transport family protein.
  
     0.572
LO55_3025
Aldo/keto reductase family protein.
  
 
  0.571
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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