Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
waaFheptsyl_trn_II: lipopolysaccharide heptosyltransferase II. (340 aa)    
Predicted Functional Partners:
waaC
heptsyl_trn_I: lipopolysaccharide heptosyltransferase I.
 
 0.995
LO55_2106
Glycosyl transferases group 1 family protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
 0.940
rfaD
ADP-glyceromanno-heptose 6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
 
  
 0.926
rfaE1-2
rfaE_dom_I: bifunctional protein RfaE, domain I.
 
  
 0.866
LO55_2213
O-Antigen ligase family protein.
  
 
 0.864
rfaE1
rfaE_dom_I: bifunctional protein RfaE, domain I.
 
  
 0.861
rfaE2
rfaE_dom_II: bifunctional protein RfaE, domain II.
 
  
 0.861
LO55_2110
HAD-SF-IIIA: HAD hydrolase, family IIIA domain protein.
  
 0.827
rfaD-2
Heptose_epim: ADP-glyceromanno-heptose 6-epimerase.
 
  
 0.780
LO55_2759
HAD-SF-IIIA: HAD hydrolase, family IIIA domain protein.
  
 0.770
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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