STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2136Aldose 1-epimerase family protein. (261 aa)    
Predicted Functional Partners:
LO55_3948
DNA/RNA non-specific endonuclease family protein.
    
   0.892
rnz
Beta-lactamase superfamily domain protein; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
    
   0.825
LO55_2138
T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE.
       0.779
LO55_2137
N-acetylmuramoyl-L-alanine amidase family protein.
       0.776
LO55_2302
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein.
  
  
 0.732
pgi
Phosphoglucose isomerase family protein; Belongs to the GPI family.
  
 
 0.702
glk-3
Glk: glucokinase; Belongs to the bacterial glucokinase family.
    
  0.693
glk-4
Glk: glucokinase; Belongs to the bacterial glucokinase family.
    
  0.693
glk-5
Glk: glucokinase; Belongs to the bacterial glucokinase family.
    
  0.693
LO55_2104
Hypothetical protein; Phosphoglucomutase/phosphomannomutase, C-terminal domain protein.
    
 0.666
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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