Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_217Fatty acid desaturase family protein. (272 aa)    
Predicted Functional Partners:
LO55_2012
2Fe-2S iron-sulfur cluster binding domain protein.
     
 0.725
LO55_3328
2Fe-2S iron-sulfur cluster binding domain protein.
     
 0.725
LO55_2374
Fatty acid desaturase family protein.
     
  0.670
coq7
Ubiquinone biosynthesis COQ7 family protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
 
   0.622
LO55_1479
Hypothetical protein.
    
 0.598
LO55_4027
Cytochrome P450 family protein.
    
 0.598
LO55_4037
Cytochrome P450 family protein.
    
 0.598
LO55_631
Cytochrome P450 family protein.
    
 0.598
hrpA
DEAH_box_HrpA: RNA helicase HrpA.
    
 
 0.596
apaH
Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
  
 
   0.589
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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