Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_2193fkbM_fam: methyltransferase, FkbM family domain protein. (439 aa)    
Predicted Functional Partners:
LO55_1349
EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase family protein.
  
 
 0.945
LO55_5148
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.945
LO55_2192
Glycosyl transferases group 1 family protein.
 
 
 0.909
LO55_2195
ABC-2 type transporter family protein.
 
   
 0.866
LO55_5125
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.866
LO55_2194
ABC transporter family protein.
 
     0.859
LO55_1317
Polysaccharide biosynthesis/export family protein.
  
 0.857
LO55_4621
Polysaccharide biosynthesis/export family protein.
  
 0.857
epsE
epsE: polysaccharide export protein EpsE.
  
 0.857
LO55_4948
Hypothetical protein.
 
     0.605
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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