Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_2195ABC-2 type transporter family protein. (261 aa)    
Predicted Functional Partners:
LO55_2194
ABC transporter family protein.
 
  
 0.993
LO55_2192
Glycosyl transferases group 1 family protein.
 
  
 0.949
LO55_2463
Glycosyltransferase like 2 family protein.
 
  
 0.879
LO55_2193
fkbM_fam: methyltransferase, FkbM family domain protein.
 
   
 0.866
glf
UDP-GALP_mutase: UDP-galactopyranose mutase.
  
  
 0.835
LO55_2464
Glycosyl transferase 21 family protein.
 
  
 0.825
LO55_1317
Polysaccharide biosynthesis/export family protein.
  
  
 0.817
LO55_4621
Polysaccharide biosynthesis/export family protein.
  
  
 0.817
epsE
epsE: polysaccharide export protein EpsE.
  
  
 0.817
LO55_1934
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
  
 0.735
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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