STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2202type_I_sec_PrtD: type I secretion system ATPase family protein. (602 aa)    
Predicted Functional Partners:
LO55_2203
type_I_hlyD: type I secretion membrane fusion, HlyD family protein.
  
 0.968
LO55_2204
type_I_sec_TolC: type I secretion outer membrane, TolC family protein.
 
  
 0.914
LO55_2201
Hypothetical protein.
 
   
 0.796
LO55_2205
Hypothetical protein.
 
 
 0.783
LO55_2243
Hypothetical protein.
 
 
 0.751
LO55_1584
Matrixin family protein.
 
 
 
 0.747
LO55_4631
Hypothetical protein.
 
 
 0.740
pstB
Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.725
LO55_2465
Hypothetical protein.
 
   
 0.626
LO55_2209
Hemolysin-type calcium-binding repeat family protein.
  
     0.617
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.