STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2204type_I_sec_TolC: type I secretion outer membrane, TolC family protein. (450 aa)    
Predicted Functional Partners:
LO55_2203
type_I_hlyD: type I secretion membrane fusion, HlyD family protein.
 
 0.982
LO55_2202
type_I_sec_PrtD: type I secretion system ATPase family protein.
 
  
 0.914
LO55_4129
RND_mfp: efflux transporter, RND family, MFP subunit.
  
 0.840
LO55_4944
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.784
LO55_2877
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 0.756
LO55_2349
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 0.754
LO55_1060
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.751
LO55_3845
RND_mfp: efflux transporter, RND family, MFP subunit.
  
 0.723
LO55_2599
hlyD secretion family protein.
  
 0.716
LO55_2576
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.705
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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