Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2252fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (319 aa)    
Predicted Functional Partners:
LO55_2253
ABC transporter family protein.
  
 0.996
LO55_2250
Periplasmic binding family protein.
 
  
 0.993
LO55_2251
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
0.993
LO55_759
fecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.789
LO55_2254
eamA-like transporter family protein.
       0.784
LO55_760
ABC transporter family protein.
 
  
 0.634
LO55_2249
tonB dependent receptor family protein.
 
     0.613
LO55_2255
phoD-like phosphatase family protein.
       0.531
LO55_3806
Siderophore-interacting FAD-binding domain protein.
 
  
 0.471
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.