Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_2286ABC transporter family protein. (585 aa)    
Predicted Functional Partners:
LO55_2288
ABC transporter family protein.
 
  
 
0.967
LO55_966
ABC transporter family protein.
 
   
 
0.898
LO55_3806
Siderophore-interacting FAD-binding domain protein.
  
 0.745
LO55_3128
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 0.730
LO55_3785
ATPase associated with various cellular activities family protein.
   
 0.708
hrpA
DEAH_box_HrpA: RNA helicase HrpA.
    
  0.665
cydD
cydD: thiol reductant ABC exporter, CydD subunit.
    
  0.615
LO55_1729
ABC transporter family protein.
    
 0.607
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase.
   
 0.597
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.577
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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