STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2289Phasin family protein. (242 aa)    
Predicted Functional Partners:
lptE
Lipopolysaccharide-assembly family protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
   
 
 0.966
lptA
Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.
  
 
 0.897
lptB
LPS_export_lptB: LPS export ABC transporter ATP-binding protein.
  
 
 0.669
lptG
lptG_lptG: LPS export ABC transporter permease LptG.
    
 0.581
lptF
lptF_YjgP: LPS export ABC transporter permease LptF.
    
 0.581
LO55_2288
ABC transporter family protein.
     
 0.515
LO55_2290
Amidohydrolase family protein.
       0.512
LO55_2286
ABC transporter family protein.
     
 0.473
LO55_3739
Patatin-like phospholipase family protein.
  
  
 0.449
rlpA
Rare lipoA family protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.404
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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