Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_2297Lycopene cyclase family protein. (503 aa)    
Predicted Functional Partners:
LO55_1548
Glutamine amidotransferases class-II family protein.
  
 
 0.909
LO55_2296
tonB-Xanth-Caul: TonB-dependent receptor family protein.
 
     0.893
LO55_1290
Cupin-like domain protein.
 
     0.799
LO55_1291
sapC family protein.
 
     0.797
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.783
LO55_1292
tonB-Xanth-Caul: TonB-dependent receptor family protein.
  
     0.773
LO55_3034
tonB-Xanth-Caul: TonB-dependent receptor family protein.
  
     0.772
LO55_3809
tonB-Xanth-Caul: TonB-dependent receptor family protein.
  
     0.772
LO55_4203
tonB-Xanth-Caul: TonB-dependent receptor family protein.
  
     0.772
LO55_2299
tonB-Xanth-Caul: TonB-dependent receptor family protein.
  
     0.771
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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