STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2301Major Facilitator Superfamily protein. (444 aa)    
Predicted Functional Partners:
cdase
Cyclomaltodextrinase; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.789
LO55_2303
Alpha amylase, catalytic domain protein.
 
  
 0.729
LO55_3036
Hypothetical protein; Glycosyl-hydrolase 97 N-terminal family protein.
 
     0.727
LO55_2299
tonB-Xanth-Caul: TonB-dependent receptor family protein.
 
     0.705
LO55_3035
Alpha amylase, catalytic domain protein.
 
     0.685
LO55_2060
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
    
  0.659
LO55_2296
tonB-Xanth-Caul: TonB-dependent receptor family protein.
  
     0.589
LO55_3034
tonB-Xanth-Caul: TonB-dependent receptor family protein.
  
     0.587
gluP
gluP: glucose/galactose transporter WARNING family protein.
 
  
 0.520
LO55_3573
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family.
 
   
 0.512
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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