STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2341lytTr DNA-binding domain protein. (55 aa)    
Predicted Functional Partners:
LO55_2343
Histidine kinase family protein.
 
 0.844
LO55_4977
Histidine kinase family protein.
 
 0.741
LO55_3464
HAMP domain protein.
    
 0.732
LO55_3639
His Kinase A domain protein.
    
 0.732
LO55_390
Histidine kinase family protein.
 
 0.708
LO55_4555
Sensory box protein.
    
 0.704
LO55_4545
Histidine kinase family protein.
 
 0.692
LO55_1835
Histidine kinase family protein.
 
 0.676
LO55_5156
His Kinase A domain protein.
    
 0.660
LO55_2342
Response regulator.
 
    
0.656
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.