STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2344Retinal pigment epithelial membrane family protein. (490 aa)    
Predicted Functional Partners:
LO55_2345
Hypothetical protein.
 
   
 0.835
LO55_2343
Histidine kinase family protein.
       0.775
udk
Udk: uridine kinase.
   
 
 0.774
xdhB
xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit.
     
 0.694
pepA
Hypothetical protein; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
     
 0.609
LO55_2341
lytTr DNA-binding domain protein.
 
     0.606
LO55_413
Squalene/phytoene synthase family protein.
     
 0.575
hpnC
hpnC: squalene synthase HpnC.
     
 0.575
hpnD
hpnD: squalene synthase HpnD.
     
 0.575
LO55_2342
Response regulator.
       0.566
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.