STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2357HDOD domain protein. (279 aa)    
Predicted Functional Partners:
LO55_1984
HDOD domain protein.
  
     0.763
LO55_3018
HDOD domain protein.
  
     0.752
LO55_3010
HDOD domain protein.
  
     0.738
LO55_4333
HDOD domain protein.
  
     0.728
LO55_2358
PEP_exosort: PEP-CTERM -sorting domain protein.
 
     0.714
LO55_1184
HDOD domain protein.
 
     0.711
LO55_3546
Neisseria PilC beta-propeller domain protein.
  
    0.687
LO55_1824
GAF domain protein.
  
  
  0.680
flgA-2
Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
 
     0.651
LO55_442
Hypothetical protein.
  
     0.640
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.