Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2364Hypothetical protein. (288 aa)    
Predicted Functional Partners:
LO55_3464
HAMP domain protein.
  
 
 0.922
LO55_3639
His Kinase A domain protein.
  
 
 0.922
LO55_4555
Sensory box protein.
  
 
 0.867
LO55_2695
His Kinase A domain protein.
  
 
 0.840
LO55_2831
Sensory box protein.
  
 
 0.829
LO55_525
Sensory box protein.
  
 
 0.829
LO55_3442
Restriction endonuclease family protein.
   
 
 0.803
sucA
2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
    
 
 0.801
LO55_4955
Sensory box protein.
  
 
 0.801
LO55_2363
vgr_GE: Rhs element Vgr family protein.
       0.776
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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