Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2365Hypothetical protein. (646 aa)    
Predicted Functional Partners:
LO55_1846
vgr_GE: Rhs element Vgr family protein.
 
     0.770
LO55_2029
vgr_GE: Rhs element Vgr family protein.
 
     0.737
LO55_3797
vgr_GE: Rhs element Vgr family protein.
 
     0.732
LO55_1455
Hypothetical protein.
  
     0.728
LO55_4602
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
  
     0.724
LO55_2363
vgr_GE: Rhs element Vgr family protein.
 
     0.723
LO55_4601
Hypothetical protein.
  
     0.722
LO55_1458
Hypothetical protein.
  
     0.685
LO55_4593
impA-related N-terminal family protein.
  
   
 0.682
LO55_4366
vgr_GE: Rhs element Vgr family protein.
 
     0.677
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.