Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2373Mechanosensitive ion channel family protein. (451 aa)    
Predicted Functional Partners:
LO55_2372
ubiE/COQ5 methyltransferase family protein.
 
     0.840
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.777
LO55_2850
marC integral membrane family protein.
 
    0.608
LO55_2370
Barstar family protein.
       0.606
LO55_2374
Fatty acid desaturase family protein.
       0.557
LO55_4477
marC integral membrane family protein.
  
    0.525
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
    0.432
LO55_2586
Mechanosensitive ion channel family protein.
  
     0.426
LO55_986
Hypothetical protein.
 
     0.410
LO55_563
Mechanosensitive ion channel family protein.
 
   
 0.402
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.