Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_2389iclR helix-turn-helix domain protein. (261 aa)    
Predicted Functional Partners:
uca
Urea_carbox: urea carboxylase.
  
 
 0.971
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
    
 0.718
LO55_1199
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
    
  0.668
LO55_4021
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
    
  0.668
LO55_2390
Prokaryotic diacylglycerol kinase family protein; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
       0.586
LO55_2391
Hypothetical protein; C-terminal domain of 1-Cys peroxiredoxin family protein.
     
 0.543
LO55_3696
Bacterial regulatory s, gntR family protein.
  
  
 0.542
hutH
hutH: histidine ammonia-lyase.
    
 0.531
LO55_2894
AAA domain protein.
   
    0.510
LO55_4014
iclR helix-turn-helix domain protein.
  
     0.510
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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