STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2455phytanoyl-CoA dioxygenase family protein. (325 aa)    
Predicted Functional Partners:
rfaD-2
Heptose_epim: ADP-glyceromanno-heptose 6-epimerase.
     
 0.530
rfaE1
rfaE_dom_I: bifunctional protein RfaE, domain I.
       0.528
gmhA
gmhA: phosphoheptose isomerase.
       0.458
LO55_2459
Hypothetical protein.
       0.458
LO55_5125
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.439
LO55_1365
acCoA-C-Actrans: acetyl-CoA C-acyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.428
LO55_1530
acCoA-C-Actrans: acetyl-CoA C-acyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.428
pcaF
pcaF: 3-oxoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.428
LO55_4000
acCoA-C-Actrans: acetyl-CoA C-acyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.428
LO55_4013
Putative thiolase.
   
 
 0.428
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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