Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LO55_1359 | LO55_137 | LO55_1359 | LO55_137 | NADH:flavin oxidoreductase / NADH oxidase family protein. | 2Fe-2S iron-sulfur cluster binding domain protein. | 0.999 |
LO55_1359 | LO55_1548 | LO55_1359 | LO55_1548 | NADH:flavin oxidoreductase / NADH oxidase family protein. | Glutamine amidotransferases class-II family protein. | 0.999 |
LO55_1359 | LO55_2012 | LO55_1359 | LO55_2012 | NADH:flavin oxidoreductase / NADH oxidase family protein. | 2Fe-2S iron-sulfur cluster binding domain protein. | 0.943 |
LO55_1359 | LO55_248 | LO55_1359 | LO55_248 | NADH:flavin oxidoreductase / NADH oxidase family protein. | Flavin-binding monooxygenase-like family protein. | 0.735 |
LO55_1359 | LO55_3328 | LO55_1359 | LO55_3328 | NADH:flavin oxidoreductase / NADH oxidase family protein. | 2Fe-2S iron-sulfur cluster binding domain protein. | 0.937 |
LO55_1359 | gcvP | LO55_1359 | LO55_3553 | NADH:flavin oxidoreductase / NADH oxidase family protein. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.787 |
LO55_1359 | trxA | LO55_1359 | LO55_1960 | NADH:flavin oxidoreductase / NADH oxidase family protein. | Thioredoxin: thioredoxin; Belongs to the thioredoxin family. | 0.466 |
LO55_1359 | trxA-2 | LO55_1359 | LO55_4413 | NADH:flavin oxidoreductase / NADH oxidase family protein. | Thioredoxin: thioredoxin. | 0.466 |
LO55_137 | LO55_1359 | LO55_137 | LO55_1359 | 2Fe-2S iron-sulfur cluster binding domain protein. | NADH:flavin oxidoreductase / NADH oxidase family protein. | 0.999 |
LO55_137 | LO55_1548 | LO55_137 | LO55_1548 | 2Fe-2S iron-sulfur cluster binding domain protein. | Glutamine amidotransferases class-II family protein. | 0.760 |
LO55_137 | LO55_2012 | LO55_137 | LO55_2012 | 2Fe-2S iron-sulfur cluster binding domain protein. | 2Fe-2S iron-sulfur cluster binding domain protein. | 0.837 |
LO55_137 | LO55_248 | LO55_137 | LO55_248 | 2Fe-2S iron-sulfur cluster binding domain protein. | Flavin-binding monooxygenase-like family protein. | 0.742 |
LO55_137 | LO55_3328 | LO55_137 | LO55_3328 | 2Fe-2S iron-sulfur cluster binding domain protein. | 2Fe-2S iron-sulfur cluster binding domain protein. | 0.867 |
LO55_137 | gcvP | LO55_137 | LO55_3553 | 2Fe-2S iron-sulfur cluster binding domain protein. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.723 |
LO55_137 | trxA | LO55_137 | LO55_1960 | 2Fe-2S iron-sulfur cluster binding domain protein. | Thioredoxin: thioredoxin; Belongs to the thioredoxin family. | 0.505 |
LO55_137 | trxA-2 | LO55_137 | LO55_4413 | 2Fe-2S iron-sulfur cluster binding domain protein. | Thioredoxin: thioredoxin. | 0.421 |
LO55_1548 | LO55_1359 | LO55_1548 | LO55_1359 | Glutamine amidotransferases class-II family protein. | NADH:flavin oxidoreductase / NADH oxidase family protein. | 0.999 |
LO55_1548 | LO55_137 | LO55_1548 | LO55_137 | Glutamine amidotransferases class-II family protein. | 2Fe-2S iron-sulfur cluster binding domain protein. | 0.760 |
LO55_1548 | LO55_2391 | LO55_1548 | LO55_2391 | Glutamine amidotransferases class-II family protein. | Hypothetical protein; C-terminal domain of 1-Cys peroxiredoxin family protein. | 0.439 |
LO55_1548 | LO55_248 | LO55_1548 | LO55_248 | Glutamine amidotransferases class-II family protein. | Flavin-binding monooxygenase-like family protein. | 0.789 |
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