STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
LO55_248Flavin-binding monooxygenase-like family protein. (339 aa)    
Predicted Functional Partners:
LO55_1548
Glutamine amidotransferases class-II family protein.
    
  0.877
trxA
Thioredoxin: thioredoxin; Belongs to the thioredoxin family.
  
 0.845
trxA-2
Thioredoxin: thioredoxin.
  
 0.783
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.758
ahpC
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.747
trxB
TRX_reduct: thioredoxin-disulfide reductase.
     
 0.739
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
     
 0.712
LO55_2391
Hypothetical protein; C-terminal domain of 1-Cys peroxiredoxin family protein.
  
 
 0.705
LO55_5089
cys/Met metabolism PLP-dependent enzyme family protein.
   
 
 0.705
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
   
 0.700
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.