Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_253Beta-eliminating lyase family protein; Belongs to the DegT/DnrJ/EryC1 family. (370 aa)    
Predicted Functional Partners:
LO55_1349
EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase family protein.
  
 
 0.971
LO55_5148
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.971
rfbB
dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.942
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
 
 0.930
LO55_4618
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
 
 0.925
LO55_137
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.827
fcl
rmlD substrate binding domain protein; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
  
 
 0.790
LO55_847
NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.785
LO55_3495
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein.
 
 
 0.777
gfo
Glucose--fructose oxidoreductase.
 
 
 0.769
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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