STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_253Beta-eliminating lyase family protein; Belongs to the DegT/DnrJ/EryC1 family. (370 aa)    
Predicted Functional Partners:
LO55_1349
EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase family protein.
 
 
 0.965
rfbB
dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.965
LO55_5148
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
 
 
 0.962
LO55_4618
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
 
 0.932
LO55_848
wecB: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.863
LO55_3495
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein.
 
 
 0.853
gfo
Glucose--fructose oxidoreductase.
 
 
 0.847
LO55_1632
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein.
  
 
 0.826
LO55_1734
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein.
  
 
 0.826
LO55_4451
Maltose acetyltransferase family protein.
  
 
 0.809
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.