STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2542Peptidase S41 family protein. (572 aa)    
Predicted Functional Partners:
LO55_2543
SIS domain protein.
       0.556
zwf
Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
       0.542
LO55_2540
GAF domain protein.
     
 0.536
LO55_3315
Hypothetical protein; Insecticide toxin TcdB middle/N-terminal region family protein.
  
   0.534
LO55_2541
Putative lipoprotein.
       0.526
LO55_1243
Peptidase M23 family protein.
  
  
 0.510
LO55_674
ABC-2 transporter family protein.
 
  
 0.483
LO55_2332
NHL repeat family protein.
  
   0.474
LO55_732
Peptidase M1 family protein.
 
  
 0.465
LO55_4783
PA domain protein.
  
   0.463
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.